A collaborative exercise on DNA methylation based body fluid typing

Sang Eun Jung, Sohee Cho, Joana Antunes, Iva Gomes, Mari L Uchimoto, Yu Na Oh, Lisa Di Giacomo, Peter M. Schneider, Min Sun Park, Dieudonne van der Meer, Graham Williams, Bruce McCord, Hee Jung Ahn, Dong Ho Choi, Yang Han Lee, Soong Deok Lee, Hwan Young Lee

Research output: Contribution to journalArticle

3 Citations (Scopus)

Abstract

A collaborative exercise on DNA methylation based body fluid identification was conducted by seven laboratories. For this project, a multiplex methylation SNaPshot reaction composed of seven CpG markers was used for the identification of four body fluids, including blood, saliva, semen, and vaginal fluid. A total of 30 specimens were prepared and distributed to participating laboratories after thorough testing. The required experiments included four increasingly complex tasks: (1) CE of a purified single-base extension reaction product, (2) multiplex PCR and multiplex single-base extension reaction of bisulfite-modified DNA, (3) bisulfite conversion of genomic DNA, and (4) extraction of genomic DNA from body fluid samples. In tasks 2, 3 and 4, one or more mixtures were analyzed, and specimens containing both known and unknown body fluid sources were used. Six of the laboratories generated consistent body fluid typing results for specimens of bisulfite-converted DNA and genomic DNA. One laboratory failed to set up appropriate conditions for capillary analysis of reference single-base extension products. In general, variation in the values obtained for DNA methylation analysis between laboratories increased with the complexity of the required experiments. However, all laboratories concurred on the interpretation of the DNA methylation profiles produced. Although the establishment of interpretational guidelines on DNA methylation based body fluid identification has yet to be performed, this study supports the addition of DNA methylation profiling to forensic body fluid typing.

LanguageEnglish
Pages2759-2766
Number of pages8
JournalElectrophoresis
Volume37
Issue number21
Early online date20 Aug 2016
DOIs
Publication statusPublished - 1 Oct 2016

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Body fluids
Body Fluids
DNA Methylation
DNA
Methylation
DNA Fingerprinting
Multiplex Polymerase Chain Reaction
Semen
Reaction products
Saliva
Blood
Experiments
Guidelines
Fluids
Testing
hydrogen sulfite

Cite this

Jung, S. E., Cho, S., Antunes, J., Gomes, I., Uchimoto, M. L., Oh, Y. N., ... Lee, H. Y. (2016). A collaborative exercise on DNA methylation based body fluid typing. Electrophoresis, 37(21), 2759-2766. https://doi.org/10.1002/elps.201600256
Jung, Sang Eun ; Cho, Sohee ; Antunes, Joana ; Gomes, Iva ; Uchimoto, Mari L ; Oh, Yu Na ; Di Giacomo, Lisa ; Schneider, Peter M. ; Park, Min Sun ; van der Meer, Dieudonne ; Williams, Graham ; McCord, Bruce ; Ahn, Hee Jung ; Choi, Dong Ho ; Lee, Yang Han ; Lee, Soong Deok ; Lee, Hwan Young. / A collaborative exercise on DNA methylation based body fluid typing. In: Electrophoresis. 2016 ; Vol. 37, No. 21. pp. 2759-2766.
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Jung, SE, Cho, S, Antunes, J, Gomes, I, Uchimoto, ML, Oh, YN, Di Giacomo, L, Schneider, PM, Park, MS, van der Meer, D, Williams, G, McCord, B, Ahn, HJ, Choi, DH, Lee, YH, Lee, SD & Lee, HY 2016, 'A collaborative exercise on DNA methylation based body fluid typing', Electrophoresis, vol. 37, no. 21, pp. 2759-2766. https://doi.org/10.1002/elps.201600256

A collaborative exercise on DNA methylation based body fluid typing. / Jung, Sang Eun; Cho, Sohee; Antunes, Joana; Gomes, Iva; Uchimoto, Mari L; Oh, Yu Na; Di Giacomo, Lisa; Schneider, Peter M.; Park, Min Sun; van der Meer, Dieudonne; Williams, Graham; McCord, Bruce; Ahn, Hee Jung; Choi, Dong Ho; Lee, Yang Han; Lee, Soong Deok; Lee, Hwan Young.

In: Electrophoresis, Vol. 37, No. 21, 01.10.2016, p. 2759-2766.

Research output: Contribution to journalArticle

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Jung SE, Cho S, Antunes J, Gomes I, Uchimoto ML, Oh YN et al. A collaborative exercise on DNA methylation based body fluid typing. Electrophoresis. 2016 Oct 1;37(21):2759-2766. https://doi.org/10.1002/elps.201600256