TY - JOUR
T1 - Fast, Linear Time Hierarchical Clustering using the Baire Metric
AU - Contreras, Pedro
AU - Murtagh, Fionn
PY - 2012/7/1
Y1 - 2012/7/1
N2 - The Baire metric induces an ultrametric on a dataset and is of linear computational complexity, contrasted with the standard quadratic time agglomerative hierarchical clustering algorithm. In this work we evaluate empirically this new approach to hierarchical clustering. We compare hierarchical clustering based on the Baire metric with (i) agglomerative hierarchical clustering, in terms of algorithm properties; (ii) generalized ultrametrics, in terms of definition; and (iii) fast clustering through k-means partitioning, in terms of quality of results. For the latter, we carry out an in depth astronomical study. We apply the Baire distance to spectrometric and photometric redshifts from the Sloan Digital Sky Survey using, in this work, about half a million astronomical objects. We want to know how well the (more costly to determine) spectrometric redshifts can predict the (more easily obtained) photometric redshifts, i. e. we seek to regress the spectrometric on the photometric redshifts, and we use clusterwise regression for this.
AB - The Baire metric induces an ultrametric on a dataset and is of linear computational complexity, contrasted with the standard quadratic time agglomerative hierarchical clustering algorithm. In this work we evaluate empirically this new approach to hierarchical clustering. We compare hierarchical clustering based on the Baire metric with (i) agglomerative hierarchical clustering, in terms of algorithm properties; (ii) generalized ultrametrics, in terms of definition; and (iii) fast clustering through k-means partitioning, in terms of quality of results. For the latter, we carry out an in depth astronomical study. We apply the Baire distance to spectrometric and photometric redshifts from the Sloan Digital Sky Survey using, in this work, about half a million astronomical objects. We want to know how well the (more costly to determine) spectrometric redshifts can predict the (more easily obtained) photometric redshifts, i. e. we seek to regress the spectrometric on the photometric redshifts, and we use clusterwise regression for this.
KW - Baire
KW - Hierarchical clustering
KW - k-means
KW - Longest common prefix
KW - m-adic
KW - p-adic
KW - Redshift
KW - Ultrametric
UR - http://www.scopus.com/inward/record.url?scp=84863004563&partnerID=8YFLogxK
U2 - 10.1007/s00357-012-9106-3
DO - 10.1007/s00357-012-9106-3
M3 - Article
AN - SCOPUS:84863004563
VL - 29
SP - 118
EP - 143
JO - Journal of Classification
JF - Journal of Classification
SN - 0176-4268
IS - 2
ER -