Biodiesel is a promising non-toxic and biodegradable alternative fuel used in the transport sector. Nevertheless, the higher viscosity and density of biodiesel poses some acute problems when it is used it in unmodified engine. Taking this into consideration, this study has been focused towards two objectives. The first objective is to identify the effect of temperature on density and viscosity for a variety of biodiesels and also to develop a correlation between density and viscosity for these biodiesels. The second objective is to investigate and quantify the effects of density and viscosity of the biodiesels and their blends on various components of the engine fuel supply system such as fuel pump, fuel filters and fuel injector. To achieve first objective density and viscosity of rapeseed oil biodiesel, corn oil biodiesel and waste oil biodiesel blends (0B, 5B, 10B, 20B, 50B, 75B, and 100B) were tested at different temperatures using EN ISO 3675:1998 and EN ISO 3104:1996 standards. For both density and viscosity new correlations were developed and compared with published literature. A new correlation between biodiesel density and biodiesel viscosity was also developed. The second objective was achieved by using analytical models showing the effects of density and viscosity on the performance of fuel supply system. These effects were quantified over a wide range of engine operating conditions. It can be seen that the higher density and viscosity of biodiesel have a significant impact on the performance of fuel pumps and fuel filters as well as on air-fuel mixing behaviour of compression ignition (CI) engine.