Whole-Genome Sequence of the Anaerobic Isosaccharinic Acid Degrading Isolate, Macellibacteroides fermentans Strain HH-ZS

Simon Rout; Zohier Salah; Christopher Charles; Paul Humphreys

doi:10.1093/gbe/evx151

Whole-Genome Sequence of the Anaerobic Isosaccharinic Acid Degrading Isolate, Macellibacteroides fermentans Strain HH-ZS

Simon Rout, Zohier Salah, Christopher Charles, Paul Humphreys

Research output: Contribution to journal › Article › peer-review

32 Citations (Scopus)

Abstract

The ability of micro-organisms to degrade isosaccharinic acids (ISAs) while tolerating hyperalkaline conditions is pivotal to our understanding of the biogeochemistry associated within these environs, but also in scenarios pertaining to the cementitious disposal of radioactive wastes. An alkalitolerant, ISA degrading micro-organism was isolated from the hyperalkaline soils resulting from lime depositions. Here, we report the first whole-genome sequence, ISA degradation profile and carbohydrate preoteome of a Macellibacteroides fermentans strain HH-ZS, 4.08 Mb in size, coding 3,241 proteins, 64 tRNA, and 1 rRNA.

Original language	English
Pages (from-to)	2140-2144
Number of pages	5
Journal	Genome Biology and Evolution
Volume	9
Issue number	8
DOIs	https://doi.org/10.1093/gbe/evx151
Publication status	Published - 16 Aug 2017

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10.1093/gbe/evx151Licence: CC BY-NC

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title = "Whole-Genome Sequence of the Anaerobic Isosaccharinic Acid Degrading Isolate, Macellibacteroides fermentans Strain HH-ZS",

abstract = "The ability of micro-organisms to degrade isosaccharinic acids (ISAs) while tolerating hyperalkaline conditions is pivotal to our understanding of the biogeochemistry associated within these environs, but also in scenarios pertaining to the cementitious disposal of radioactive wastes. An alkalitolerant, ISA degrading micro-organism was isolated from the hyperalkaline soils resulting from lime depositions. Here, we report the first whole-genome sequence, ISA degradation profile and carbohydrate preoteome of a Macellibacteroides fermentans strain HH-ZS, 4.08 Mb in size, coding 3,241 proteins, 64 tRNA, and 1 rRNA.",

keywords = "Macellibacteroides fermentans, Obligate anaerobe, Alkalitolerant, Whole genome sequence, Bacteroidetes, Isosaccharinic acid",

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AU - Rout, Simon

AU - Salah, Zohier

AU - Charles, Christopher

AU - Humphreys, Paul

PY - 2017/8/16

Y1 - 2017/8/16

N2 - The ability of micro-organisms to degrade isosaccharinic acids (ISAs) while tolerating hyperalkaline conditions is pivotal to our understanding of the biogeochemistry associated within these environs, but also in scenarios pertaining to the cementitious disposal of radioactive wastes. An alkalitolerant, ISA degrading micro-organism was isolated from the hyperalkaline soils resulting from lime depositions. Here, we report the first whole-genome sequence, ISA degradation profile and carbohydrate preoteome of a Macellibacteroides fermentans strain HH-ZS, 4.08 Mb in size, coding 3,241 proteins, 64 tRNA, and 1 rRNA.

AB - The ability of micro-organisms to degrade isosaccharinic acids (ISAs) while tolerating hyperalkaline conditions is pivotal to our understanding of the biogeochemistry associated within these environs, but also in scenarios pertaining to the cementitious disposal of radioactive wastes. An alkalitolerant, ISA degrading micro-organism was isolated from the hyperalkaline soils resulting from lime depositions. Here, we report the first whole-genome sequence, ISA degradation profile and carbohydrate preoteome of a Macellibacteroides fermentans strain HH-ZS, 4.08 Mb in size, coding 3,241 proteins, 64 tRNA, and 1 rRNA.

KW - Macellibacteroides fermentans

KW - Obligate anaerobe

KW - Alkalitolerant

KW - Whole genome sequence

KW - Bacteroidetes

KW - Isosaccharinic acid

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DO - 10.1093/gbe/evx151

M3 - Article

SN - 1759-6653

VL - 9

SP - 2140

EP - 2144

JO - Genome Biology and Evolution

JF - Genome Biology and Evolution

IS - 8

ER -

Whole-Genome Sequence of the Anaerobic Isosaccharinic Acid Degrading Isolate, Macellibacteroides fermentans Strain HH-ZS

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